Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP76C1 (At2g45560)	save all data as Tab Delimited Table
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Pathways co-expressed in 3 data sets with co-expressed pathways					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no pathways co-expressed in the 3 applicable data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP76C1 (At2g45560)
max. difference between log2-ratios:				6.1
max. difference between log2-ratios excluding lowest and highest 5%:				3.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.000
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.023
fatty acid beta oxidation complex	BioPath	9	0.000	1	0.000
Gluconeogenesis from lipids in seeds	BioPath	9	0.000	1	0.004
development	TAIR-GO	9	0.000	1	0.002
flower development	TAIR-GO	9	0.000	1	0.000
seed germination	TAIR-GO	9	0.000	1	0.000
fatty acid oxidation pathway	AraCyc	9	0.000	1	0.000
isoleucine degradation I	AraCyc	9	0.000	1	0.001
isoleucine degradation III	AraCyc	9	0.000	1	0.000
leucine degradation I	AraCyc	9	0.000	1	0.001
leucine degradation II	AraCyc	9	0.000	1	0.000
valine degradation I	AraCyc	9	0.000	1	0.001
valine degradation II	AraCyc	9	0.000	1	0.000
oxidation of fatty acids	FunCat	9	0.000	1	0.000
Degradation of storage lipids and straight fatty acids	AcylLipid	9	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 10 annotation points)						CYP76C1 (At2g45560)
max. difference between log2-ratios:				3.7
max. difference between log2-ratios excluding lowest and highest 5%:				1.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
C-compound and carbohydrate metabolism	FunCat	52	0.000	8	0.000
Cell Wall Carbohydrate Metabolism	BioPath	51	0.000	9	0.032
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	40	0.000	4	0.009
Starch and sucrose metabolism	KEGG	36	0.000	5	0.000
starch metabolism	BioPath	30	0.000	6	0.000
starch degradation	AraCyc	21	0.000	3	0.000
Carotenoid biosynthesis	BioPath	20	0.000	2	0.001
Chlorophyll biosynthesis and breakdown	BioPath	20	0.000	2	0.014
carotenoid biosynthesis	AraCyc	20	0.000	2	0.000
carotenid biosynthesis	LitPath	20	0.000	2	0.000
Carotenoid and abscisic acid metabolism	LitPath	20	0.000	2	0.003
chlorophyll and phytochromobilin metabolism	LitPath	20	0.000	2	0.010
Transcription (chloroplast)	BioPath	18	0.000	2	0.000
transcription initiation	TAIR-GO	18	0.000	2	0.000
Streptomycin biosynthesis	KEGG	17	0.000	2	0.000
glycolysis and gluconeogenesis	FunCat	14	0.000	2	0.059
mRNA processing in chloroplast	BioPath	12	0.000	2	0.001
starch biosynthesis	AraCyc	12	0.000	2	0.000
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP76C1 (At2g45560)
max. difference between log2-ratios:				3.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
biogenesis of chloroplast	FunCat	16	0.000	2	0.004
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	10	0.000	1	0.024
Chloroplastic protein import via envelope membrane	BioPath	10	0.000	2	0.000
Delta-pH pathway	BioPath	10	0.000	1	0.000
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.036
Intermediary Carbon Metabolism	BioPath	10	0.016	1	0.156
mRNA processing in chloroplast	BioPath	10	0.000	1	0.001
Pathway for nuclear-encoded, thylakoid-localized proteins	BioPath	10	0.000	1	0.001
Phenylpropanoid Metabolism	BioPath	10	0.048	1	0.180
Translation (chloroplast)	BioPath	10	0.000	1	0.000
aromatic amino acid family biosynthesis	TAIR-GO	10	0.000	1	0.001
aromatic amino acid family biosynthesis, shikimate pathway	TAIR-GO	10	0.000	1	0.001
chloroplast thylakoid membrane protein import	TAIR-GO	10	0.000	1	0.000
pentose-phosphate shunt	TAIR-GO	10	0.000	1	0.001
acetate fermentation	AraCyc	10	0.000	1	0.020
Calvin cycle	AraCyc	10	0.000	1	0.006
fructose degradation (anaerobic)	AraCyc	10	0.000	1	0.017
glycolysis I	AraCyc	10	0.000	1	0.063
glycolysis IV	AraCyc	10	0.000	1	0.018
mannitol degradation	AraCyc	10	0.000	1	0.003
sorbitol degradation	AraCyc	10	0.000	1	0.003
sorbitol fermentation	AraCyc	10	0.000	1	0.019
amino acid metabolism	FunCat	10	0.007	1	0.107
glycolysis and gluconeogenesis	FunCat	10	0.003	1	0.132
pentose-phosphate pathway	FunCat	10	0.000	1	0.006
protein modification	FunCat	10	0.000	1	0.003
Carbon fixation	KEGG	10	0.000	1	0.016
Fructose and mannose metabolism	KEGG	10	0.000	1	0.008
Glycolysis / Gluconeogenesis	KEGG	10	0.000	1	0.022
Pentose phosphate pathway	KEGG	10	0.000	1	0.007
Phenylalanine, tyrosine and tryptophan biosynthesis	KEGG	10	0.000	1	0.007
chorismate biosynthesis	LitPath	10	0.000	1	0.002
Shikimate pathway	LitPath	10	0.000	1	0.019
acetate metabolism	TAIR-GO	9	0.000	1	0.000
glyoxylate cycle	TAIR-GO	9	0.000	1	0.000
lipid, fatty acid and isoprenoid metabolism	FunCat	9	0.000	1	0.020
transport	FunCat	8	0.000	2	0.000
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP76C1 (At2g45560)
max. difference between log2-ratios:				5.4
max. difference between log2-ratios excluding lowest and highest 5%:				2.1
						Link to mutants heatmap
there are no co-expressed pathways with r-value greater than 0.5
page created by Juergen Ehlting	03/06/06