Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP76C2 (At2g45570) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



















there are no pathways co-expressed in all four data sets




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP76C2 (At2g45570)







max. difference between log2-ratios: 6.8











max. difference between log2-ratios excluding lowest and highest 5%: 4.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






toxin catabolism TAIR-GO 14 0.000 3 0.000










lignin biosynthesis AraCyc 12 0.000 2 0.001


Glutathione metabolism KEGG 12 0.000 2 0.000

Phenylpropanoid pathway LitPath 12 0.000 2 0.000

Phenylpropanoid Metabolism BioPath 11 0.000 2 0.030

Biosynthesis of Amino Acids and Derivatives BioPath 10 0.002 1 0.148

core phenylpropanoid metabolism BioPath 10 0.000 1 0.014










Glutathione metabolism BioPath 10 0.000 1 0.032










lignin biosynthesis TAIR-GO 10 0.000 1 0.000










Stilbene, coumarine and lignin biosynthesis KEGG 10 0.000 1 0.021










hyperosmotic salinity response TAIR-GO 9 0.000 1 0.000










proline biosynthesis TAIR-GO 9 0.000 1 0.000










arginine degradation II AraCyc 9 0.000 1 0.004










arginine degradation III AraCyc 9 0.000 1 0.001










arginine degradation V AraCyc 9 0.000 1 0.002










biosynthesis of proto- and siroheme AraCyc 9 0.000 1 0.019










biotin biosynthesis I AraCyc 9 0.000 1 0.001










chlorophyll biosynthesis AraCyc 9 0.000 1 0.030










glutamate degradation I AraCyc 9 0.000 1 0.001










lysine biosynthesis I AraCyc 9 0.000 1 0.003










amino acid metabolism FunCat 9 0.000 1 0.020










Arginine and proline metabolism KEGG 9 0.000 1 0.004










Urea cycle and metabolism of amino groups KEGG 9 0.000 1 0.001










C-compound and carbohydrate utilization FunCat 8 0.000 2 0.000












































Pathways co-expressed in the Stress data set ( with more than 20 annotation points)
CYP76C2 (At2g45570)







max. difference between log2-ratios: 8.6











max. difference between log2-ratios excluding lowest and highest 5%: 3.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Intermediary Carbon Metabolism BioPath 74 0.000 14 0.000










C-compound and carbohydrate metabolism FunCat 68 0.000 14 0.002
Phenylpropanoid Metabolism BioPath 66 0.000 10 0.013
Gluconeogenesis from lipids in seeds BioPath 65 0.000 8 0.000
Biosynthesis of Amino Acids and Derivatives BioPath 54 0.001 6 0.232
Citrate cycle (TCA cycle) KEGG 52 0.000 8 0.000
Degradation of storage lipids and straight fatty acids AcylLipid 51 0.000 7 0.000
tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 42 0.000 7 0.004
Fatty acid metabolism KEGG 40 0.000 7 0.000
Phenylpropanoid pathway LitPath 38 0.000 7 0.001
fatty acid beta oxidation complex BioPath 37 0.000 4 0.000
amino acid metabolism FunCat 37 0.000 5 0.047
TCA cycle -- aerobic respiration AraCyc 36 0.000 6 0.003
Glutathione metabolism KEGG 36 0.000 5 0.006
Glutamate metabolism KEGG 35 0.000 4 0.029










core phenylpropanoid metabolism BioPath 34 0.000 5 0.002










acetyl-CoA assimilation AraCyc 32 0.000 5 0.002










TCA cycle variation VII AraCyc 32 0.000 5 0.066










TCA cycle variation VIII AraCyc 32 0.000 5 0.014










Arginine and proline metabolism KEGG 32 0.000 5 0.006










Glyoxylate and dicarboxylate metabolism KEGG 32 0.000 5 0.001










glyoxylate cycle AraCyc 28 0.000 4 0.002










serine-isocitrate lyase pathway AraCyc 28 0.000 4 0.036










lignin biosynthesis AraCyc 26 0.000 5 0.008










TCA cycle variation IV AraCyc 26 0.000 4 0.036










Glutathione metabolism BioPath 24 0.005 3 0.153










lipid, fatty acid and isoprenoid degradation FunCat 24 0.000 4 0.001










Glycolysis / Gluconeogenesis KEGG 24 0.045 5 0.091










Nucleotide Metabolism KEGG 24 0.012 3 0.372










Pyruvate metabolism KEGG 24 0.045 5 0.070










mixed acid fermentation AraCyc 22 0.000 4 0.013










C-compound and carbohydrate utilization FunCat 22 0.000 3 0.000










Stilbene, coumarine and lignin biosynthesis KEGG 22 0.024 3 0.577












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP76C2 (At2g45570)







max. difference between log2-ratios: 3.8











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 45 0.000 7 0.002










Phenylpropanoid pathway LitPath 28 0.000 5 0.000





core phenylpropanoid metabolism BioPath 26 0.000 4 0.000




Gluconeogenesis from lipids in seeds BioPath 26 0.000 4 0.002




biogenesis of cell wall FunCat 24 0.000 3 0.004




Miscellaneous acyl lipid metabolism AcylLipid 22 0.000 5 0.006




Fatty acid metabolism KEGG 20 0.000 2 0.004




Glutathione metabolism KEGG 20 0.000 4 0.000




degradation of abscisic acid LitPath 20 0.000 2 0.000




ascorbate glutathione cycle AraCyc 18 0.000 2 0.002




Arginine and proline metabolism KEGG 18 0.000 3 0.001




Glutamate metabolism KEGG 17 0.000 3 0.001




polyamine biosynthesis TAIR-GO 16 0.000 2 0.000




polyamine biosynthesis I AraCyc 16 0.000 2 0.008










polyamine biosynthesis II AraCyc 16 0.000 2 0.002










polyamine biosynthesis III AraCyc 16 0.000 2 0.001










spermine biosynthesis I AraCyc 16 0.000 2 0.001










Glutathione metabolism BioPath 14 0.004 2 0.074










lignin biosynthesis AraCyc 14 0.000 3 0.004










transcription FunCat 14 0.000 2 0.000










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 14 0.000 3 0.001










fatty acid beta oxidation complex BioPath 12 0.000 2 0.003










alanine biosynthesis II AraCyc 12 0.000 2 0.006










phenylalanine biosynthesis II AraCyc 12 0.000 2 0.004





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP76C2 (At2g45570)







max. difference between log2-ratios: 6.4











max. difference between log2-ratios excluding lowest and highest 5%: 1.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Cell Wall Carbohydrate Metabolism BioPath 8 0.000 2 0.030




C-compound and carbohydrate metabolism FunCat 7 0.005 2 0.034















































page created by Juergen Ehlting 03/06/06