Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP78A7 (At5g09970) save all data as Tab Delimited Table










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Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.






Pathway Source Sum of scores Sum of genes






glycolysis and gluconeogenesis FunCat 30 5






Intermediary Carbon Metabolism BioPath 26 3






glyoxylate cycle AraCyc 26 3






Glyoxylate and dicarboxylate metabolism KEGG 26 3
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







glyoxylate cycle AraCyc 26 3








Carbon fixation KEGG 20 3








secondary metabolism FunCat 17 2
For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP78A7 (At5g09970)







max. difference between log2-ratios: 8.0











max. difference between log2-ratios excluding lowest and highest 5%: 5.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Synthesis and storage of oil AcylLipid 38 0.000 10 0.000


Miscellaneous acyl lipid metabolism AcylLipid 25 0.015 5 0.617

gibberellic acid biosynthesis TAIR-GO 20 0.000 2 0.000

plant / fungal specific systemic sensing and response FunCat 20 0.000 2 0.002

plant hormonal regulation FunCat 20 0.000 2 0.002

Diterpenoid biosynthesis KEGG 20 0.000 2 0.000

Pyruvate metabolism KEGG 20 0.000 3 0.005

Gibberellin metabolism LitPath 20 0.000 2 0.003

giberelin biosynthesis LitPath 20 0.000 2 0.001

acyl-CoA binding TAIR-GO 19 0.000 2 0.000

lipid transport TAIR-GO 19 0.000 2 0.000

Intermediary Carbon Metabolism BioPath 16 0.000 2 0.098

glyoxylate cycle AraCyc 16 0.000 2 0.013










TCA cycle variation VII AraCyc 16 0.000 2 0.191










TCA cycle variation VIII AraCyc 16 0.000 2 0.088










glycolysis and gluconeogenesis FunCat 16 0.002 3 0.071










Glyoxylate and dicarboxylate metabolism KEGG 16 0.000 2 0.002










Gluconeogenesis from lipids in seeds BioPath 13 0.000 2 0.012










Biosynthesis of Amino Acids and Derivatives BioPath 12 0.003 2 0.112












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP78A7 (At5g09970)







max. difference between log2-ratios: 3.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to stress heatmap






there are no co-expressed genes with more than 6 annotation points








































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP78A7 (At5g09970)







max. difference between log2-ratios: 7.3











max. difference between log2-ratios excluding lowest and highest 5%: 5.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






triterpene, sterol, and brassinosteroid metabolism LitPath 15 0.000 3 0.023





C-compound and carbohydrate metabolism FunCat 14 0.000 2 0.090




glycolysis and gluconeogenesis FunCat 14 0.000 2 0.011




Phenylpropanoid Metabolism BioPath 12 0.000 2 0.047




Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.002




Intermediary Carbon Metabolism BioPath 10 0.000 1 0.177




Calvin cycle AraCyc 10 0.000 1 0.012




C-compound and carbohydrate utilization FunCat 10 0.000 1 0.000




photosynthesis FunCat 10 0.000 1 0.014




Carbon fixation KEGG 10 0.000 1 0.064




Glyoxylate and dicarboxylate metabolism KEGG 10 0.000 1 0.014










brassinosteroid metabolism TAIR-GO 9 0.000 1 0.000










response to light TAIR-GO 9 0.000 1 0.017










brassinosteroid degradation LitPath 9 0.000 1 0.000










triacylglycerol degradation AraCyc 8 0.000 4 0.000










auxin mediated signaling pathway TAIR-GO 7 0.000 1 0.000










growth TAIR-GO 7 0.000 1 0.007










response to auxin stimulus TAIR-GO 7 0.000 1 0.001










unidimensional cell growth TAIR-GO 7 0.000 1 0.002





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP78A7 (At5g09970)







max. difference between log2-ratios: 5.5











max. difference between log2-ratios excluding lowest and highest 5%: 4.0

















Link to mutants heatmap






there are no co-expressed genes with more than 6 annotation points






































page created by Juergen Ehlting 04/24/06