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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| glycolysis and gluconeogenesis |
FunCat |
30 |
5 |
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| Intermediary Carbon Metabolism |
BioPath |
26 |
3 |
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| glyoxylate cycle |
AraCyc |
26 |
3 |
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| Glyoxylate and dicarboxylate metabolism |
KEGG |
26 |
3 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| glyoxylate cycle |
AraCyc |
26 |
3 |
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| Carbon fixation |
KEGG |
20 |
3 |
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| secondary metabolism |
FunCat |
17 |
2 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) |
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CYP78A7 (At5g09970) |
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| max. difference between log2-ratios: |
8.0 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
5.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Synthesis and storage of oil |
AcylLipid |
38 |
0.000 |
10 |
0.000 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
25 |
0.015 |
5 |
0.617 |
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| gibberellic acid biosynthesis |
TAIR-GO |
20 |
0.000 |
2 |
0.000 |
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| plant / fungal specific systemic sensing and response |
FunCat |
20 |
0.000 |
2 |
0.002 |
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| plant hormonal regulation |
FunCat |
20 |
0.000 |
2 |
0.002 |
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| Diterpenoid biosynthesis |
KEGG |
20 |
0.000 |
2 |
0.000 |
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| Pyruvate metabolism |
KEGG |
20 |
0.000 |
3 |
0.005 |
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| Gibberellin metabolism |
LitPath |
20 |
0.000 |
2 |
0.003 |
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| giberelin biosynthesis |
LitPath |
20 |
0.000 |
2 |
0.001 |
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| acyl-CoA binding |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| lipid transport |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| Intermediary Carbon Metabolism |
BioPath |
16 |
0.000 |
2 |
0.098 |
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| glyoxylate cycle |
AraCyc |
16 |
0.000 |
2 |
0.013 |
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| TCA cycle variation VII |
AraCyc |
16 |
0.000 |
2 |
0.191 |
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| TCA cycle variation VIII |
AraCyc |
16 |
0.000 |
2 |
0.088 |
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| glycolysis and gluconeogenesis |
FunCat |
16 |
0.002 |
3 |
0.071 |
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| Glyoxylate and dicarboxylate metabolism |
KEGG |
16 |
0.000 |
2 |
0.002 |
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| Gluconeogenesis from lipids in seeds |
BioPath |
13 |
0.000 |
2 |
0.012 |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
12 |
0.003 |
2 |
0.112 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP78A7 (At5g09970) |
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| max. difference between log2-ratios: |
7.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
5.2 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
15 |
0.000 |
3 |
0.023 |
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| C-compound and carbohydrate metabolism |
FunCat |
14 |
0.000 |
2 |
0.090 |
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| glycolysis and gluconeogenesis |
FunCat |
14 |
0.000 |
2 |
0.011 |
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| Phenylpropanoid Metabolism |
BioPath |
12 |
0.000 |
2 |
0.047 |
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| Glucosyltransferases for benzoic acids |
BioPath |
10 |
0.000 |
1 |
0.002 |
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| Intermediary Carbon Metabolism |
BioPath |
10 |
0.000 |
1 |
0.177 |
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| Calvin cycle |
AraCyc |
10 |
0.000 |
1 |
0.012 |
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| C-compound and carbohydrate utilization |
FunCat |
10 |
0.000 |
1 |
0.000 |
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| photosynthesis |
FunCat |
10 |
0.000 |
1 |
0.014 |
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| Carbon fixation |
KEGG |
10 |
0.000 |
1 |
0.064 |
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| Glyoxylate and dicarboxylate metabolism |
KEGG |
10 |
0.000 |
1 |
0.014 |
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| brassinosteroid metabolism |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| response to light |
TAIR-GO |
9 |
0.000 |
1 |
0.017 |
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| brassinosteroid degradation |
LitPath |
9 |
0.000 |
1 |
0.000 |
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| triacylglycerol degradation |
AraCyc |
8 |
0.000 |
4 |
0.000 |
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| auxin mediated signaling pathway |
TAIR-GO |
7 |
0.000 |
1 |
0.000 |
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| growth |
TAIR-GO |
7 |
0.000 |
1 |
0.007 |
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| response to auxin stimulus |
TAIR-GO |
7 |
0.000 |
1 |
0.001 |
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| unidimensional cell growth |
TAIR-GO |
7 |
0.000 |
1 |
0.002 |
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