Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP72A11 (At3g14650) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 706 92






biogenesis of chloroplast FunCat 483 71








additional photosystem II components BioPath 370 51








chlorophyll biosynthesis AraCyc 348 42
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







photosynthesis FunCat 324 50








transport FunCat 312 56








chlorophyll biosynthesis TAIR-GO 293 33
For more information on how these pathway maps were generated please read the methods page







chlorophyll biosynthesis LitPath 277 31








photosynthesis TAIR-GO 254 35












photosystem I TAIR-GO 218 27












Biosynthesis of steroids KEGG 216 26












Carotenoid and abscisic acid metabolism LitPath 202 24












carotenoid biosynthesis AraCyc 198 22












Carotenoid biosynthesis BioPath 184 21












carotenid biosynthesis LitPath 184 21












photosystem II TAIR-GO 170 21












Pathway for nuclear-encoded, thylakoid-localized proteins BioPath 158 20












photorespiration AraCyc 156 27












photorespiration TAIR-GO 126 19












more common pathways














































Pathways co-expressed in the Organ and Tissue data set (with more than 80 annotation points)
CYP72A11 (At3g14650)







max. difference between log2-ratios: 5.6











max. difference between log2-ratios excluding lowest and highest 5%: 5.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Photosystems BioPath 512 0.000 76 0.000


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 330 0.000 43 0.000

biogenesis of chloroplast FunCat 247 0.000 37 0.000

C-compound and carbohydrate metabolism FunCat 241 0.000 42 0.038

additional photosystem II components BioPath 215 0.000 31 0.000

Photosystem I BioPath 195 0.000 30 0.000

photosynthesis FunCat 182 0.000 29 0.000

Chlorophyll biosynthesis and breakdown BioPath 163 0.000 20 0.000

photosystem I TAIR-GO 161 0.000 20 0.000

Photosynthesis KEGG 159 0.000 28 0.000

chlorophyll and phytochromobilin metabolism LitPath 157 0.000 19 0.000

glycolysis and gluconeogenesis FunCat 155 0.000 25 0.002

Chlorophyll a/b binding proteins BioPath 146 0.000 18 0.000

Carbon fixation KEGG 131 0.000 19 0.000










Porphyrin and chlorophyll metabolism KEGG 131 0.000 16 0.000










chlorophyll biosynthesis AraCyc 130 0.000 17 0.000










photosystem II TAIR-GO 128 0.000 16 0.000










Photosystem II BioPath 121 0.000 16 0.003










transport FunCat 121 0.000 21 0.000










photosynthesis TAIR-GO 112 0.000 14 0.000










Folding, Sorting and Degradation KEGG 87 0.016 13 0.210










chlorophyll binding TAIR-GO 86 0.000 10 0.000










Calvin cycle AraCyc 86 0.000 15 0.000










Biosynthesis of steroids KEGG 83 0.000 10 0.006












































Pathways co-expressed in the Stress data set ( with more than 15 annotation points)
CYP72A11 (At3g14650)







max. difference between log2-ratios: 4.7











max. difference between log2-ratios excluding lowest and highest 5%: 1.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






C-compound and carbohydrate metabolism FunCat 41 0.000 7 0.111
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 34 0.000 4 0.033
Leaf Glycerolipid Biosynthesis in Plastid BioPath 33 0.000 5 0.001
Intermediary Carbon Metabolism BioPath 32 0.002 4 0.257
Carotenoid biosynthesis BioPath 30 0.000 3 0.000
carotenoid biosynthesis AraCyc 30 0.000 3 0.000
Glycolysis / Gluconeogenesis KEGG 30 0.000 4 0.008
carotenid biosynthesis LitPath 30 0.000 3 0.000
Carotenoid and abscisic acid metabolism LitPath 30 0.000 3 0.000
Synthesis of membrane lipids in plastids AcylLipid 29 0.000 4 0.000
Biosynthesis of steroids KEGG 24 0.000 3 0.006
glycolysis and gluconeogenesis FunCat 22 0.000 3 0.172
photosystem I TAIR-GO 21 0.000 3 0.000










carotene biosynthesis TAIR-GO 20 0.000 2 0.000










Calvin cycle AraCyc 20 0.000 4 0.001










Glycine, serine and threonine metabolism KEGG 20 0.000 4 0.000










Translation (chloroplast) BioPath 18 0.000 3 0.000










acetate fermentation AraCyc 18 0.000 3 0.039










fructose degradation (anaerobic) AraCyc 18 0.000 3 0.031










glycolysis I AraCyc 18 0.004 3 0.226










glycolysis IV AraCyc 18 0.000 3 0.033










mannitol degradation AraCyc 18 0.000 3 0.001










sorbitol degradation AraCyc 18 0.000 3 0.001










sorbitol fermentation AraCyc 18 0.000 3 0.036










Gluconeogenesis from lipids in seeds BioPath 16 0.010 2 0.185










mRNA processing in chloroplast BioPath 16 0.000 3 0.000










pentose-phosphate pathway FunCat 16 0.000 2 0.006










Carbon fixation KEGG 16 0.000 2 0.087










Fructose and mannose metabolism KEGG 16 0.000 2 0.037










Glycerolipid metabolism KEGG 16 0.000 3 0.002










Pentose phosphate pathway KEGG 16 0.000 2 0.028












































Pathways co-expressed in the Hormone etc. data set (with more than 20 annotation points)
CYP72A11 (At3g14650)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 130 0.000 17 0.000





biogenesis of chloroplast FunCat 76 0.000 9 0.000




Stilbene, coumarine and lignin biosynthesis KEGG 54 0.000 9 0.002




Carotenoid and abscisic acid metabolism LitPath 50 0.000 6 0.000




transport FunCat 49 0.000 10 0.000




Carotenoid biosynthesis BioPath 44 0.000 5 0.000




carotenoid biosynthesis AraCyc 44 0.000 5 0.000




carotenid biosynthesis LitPath 44 0.000 5 0.000




Phenylpropanoid pathway LitPath 44 0.014 6 0.360




Chlorophyll biosynthesis and breakdown BioPath 40 0.000 5 0.004




core phenylpropanoid metabolism BioPath 40 0.000 4 0.063




lignin biosynthesis AraCyc 40 0.000 4 0.006




additional photosystem II components BioPath 36 0.000 5 0.010










Biosynthesis of steroids KEGG 34 0.000 5 0.004










chlorophyll and phytochromobilin metabolism LitPath 34 0.005 4 0.087










Biosynthesis of prenyl diphosphates BioPath 32 0.000 5 0.018










chlorophyll biosynthesis AraCyc 30 0.000 4 0.013










biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 28 0.000 3 0.002










Folding, Sorting and Degradation KEGG 27 0.015 6 0.065










photosynthesis FunCat 26 0.000 4 0.022










transport facilitation FunCat 26 0.000 6 0.000










transport routes FunCat 25 0.000 4 0.000










Pathway for nuclear-encoded, thylakoid-localized proteins BioPath 24 0.000 3 0.003










biosynthesis of vitamins, cofactors, and prosthetic groups FunCat 22 0.000 3 0.001





























































Pathways co-expressed in the Mutant data set (with more than 50 annotation points)
CYP72A11 (At3g14650)







max. difference between log2-ratios: 7.5











max. difference between log2-ratios excluding lowest and highest 5%: 2.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 213 0.000 37 0.044



Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 212 0.000 28 0.000


Photosystems BioPath 186 0.000 23 0.006


Intermediary Carbon Metabolism BioPath 152 0.021 25 0.157


biogenesis of chloroplast FunCat 148 0.000 23 0.000


transport FunCat 127 0.000 22 0.000


Carbon fixation KEGG 114 0.000 19 0.000


additional photosystem II components BioPath 104 0.000 13 0.000


glycolysis and gluconeogenesis FunCat 102 0.001 18 0.052


Pyruvate metabolism KEGG 102 0.000 15 0.008


photosynthesis FunCat 92 0.000 14 0.000


Chlorophyll biosynthesis and breakdown BioPath 85 0.000 11 0.001


Chlorophyll a/b binding proteins BioPath 80 0.000 10 0.000










Glycolysis / Gluconeogenesis KEGG 79 0.002 14 0.033










chlorophyll and phytochromobilin metabolism LitPath 79 0.000 10 0.001










chlorophyll biosynthesis TAIR-GO 75 0.000 8 0.000










transport facilitation FunCat 75 0.000 12 0.000










Biosynthesis of steroids KEGG 75 0.000 8 0.085










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 72 0.000 8 0.015










Selenoamino acid metabolism KEGG 72 0.000 9 0.002










triterpene, sterol, and brassinosteroid metabolism LitPath 65 0.025 9 0.307










Calvin cycle AraCyc 64 0.000 12 0.001










chlorophyll biosynthesis AraCyc 64 0.000 8 0.219










Porphyrin and chlorophyll metabolism KEGG 57 0.000 7 0.010










Citrate cycle (TCA cycle) KEGG 54 0.000 7 0.102










Pathway for nuclear-encoded, thylakoid-localized proteins BioPath 52 0.000 7 0.000










TCA cycle variation VIII AraCyc 52 0.003 8 0.171










Carotenoid and abscisic acid metabolism LitPath 52 0.000 6 0.009










lipid, fatty acid and isoprenoid metabolism FunCat 51 0.000 7 0.075










Glycine, serine and threonine metabolism KEGG 51 0.000 8 0.021



























page created by Juergen Ehlting 07/05/06