Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP90C1, ROT3 (At4g36380)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP90C1, ROT3 (At4g36380)
max. difference between log2-ratios:				5.5
max. difference between log2-ratios excluding lowest and highest 5%:				3.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
glycolysis and gluconeogenesis	FunCat	20	0.000	3	0.001
Lipid signaling	AcylLipid	17	0.000	2	0.050
lipoxygenase pathway	AraCyc	17	0.000	2	0.000
jasmonic acid biosynthesis	AraCyc	17	0.000	2	0.000
Phenylpropanoid pathway	LitPath	16	0.000	4	0.001
C-compound and carbohydrate metabolism	FunCat	15	0.012	2	0.108
Pyruvate metabolism	KEGG	14	0.000	2	0.003
glyoxylate cycle	AraCyc	14	0.000	2	0.000
Glyoxylate and dicarboxylate metabolism	KEGG	14	0.000	2	0.000
TCA cycle variation VIII	AraCyc	14	0.000	2	0.003
TCA cycle variation VII	AraCyc	14	0.000	2	0.008
growth	TAIR-GO	14	0.000	2	0.002
Intermediary Carbon Metabolism	BioPath	14	0.000	2	0.024
lignin biosynthesis	AraCyc	12	0.000	2	0.002
suberin biosynthesis	AraCyc	12	0.000	2	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP90C1, ROT3 (At4g36380)
max. difference between log2-ratios:				3.5
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
						Link to stress heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP90C1, ROT3 (At4g36380)
max. difference between log2-ratios:				2.1
max. difference between log2-ratios excluding lowest and highest 5%:				1.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
steroid biosynthesis	TAIR-GO	33	0.000	4	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	26	0.000	3	0.000
brassinosteroid biosynthesis	LitPath	23	0.000	3	0.000
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	20	0.000	2	0.000
brassinosteroid biosynthesis	TAIR-GO	19	0.000	2	0.000
growth	TAIR-GO	17	0.000	2	0.000
brassinosteroid biosynthesis I	AraCyc	10	0.000	1	0.000
unidimensional cell growth	TAIR-GO	10	0.000	1	0.003
Protein prenylation	BioPath	10	0.000	1	0.000
protein prenylation	LitPath	10	0.000	1	0.008
secondary metabolism	FunCat	10	0.000	1	0.001
gamma-Hexachlorocyclohexane degradation	KEGG	10	0.000	1	0.000
Fluorene degradation	KEGG	10	0.000	1	0.000
Ascorbate and aldarate metabolism	KEGG	10	0.000	1	0.000
brassinosteroid biosynthesis II	AraCyc	10	0.000	1	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	10	0.000	1	0.001
brassinosteroid biosynthesis	BioPath	10	0.000	1	0.000
leaf morphogenesis	TAIR-GO	7	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP90C1, ROT3 (At4g36380)
max. difference between log2-ratios:				3.8
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
male gamete generation (sensu Magnoliophyta)	TAIR-GO	7	0.000	1	0.000
metabolism of acyl-lipids in mitochondria	AcylLipid	7	0.000	1	0.000
page created by Juergen Ehlting	06/08/06